Goto

Collaborating Authors

 skin lesion segmentation


Focal Modulation and Bidirectional Feature Fusion Network for Medical Image Segmentation

arXiv.org Artificial Intelligence

Medical image segmentation is essential for clinical applications such as disease diagnosis, treatment planning, and disease development monitoring because it provides precise morphological and spatial information on anatomical structures that directly influence treatment decisions. Convolutional neural networks significantly impact image segmentation; however, since convolution operations are local, capturing global contextual information and long-range dependencies is still challenging. Their capacity to precisely segment structures with complicated borders and a variety of sizes is impacted by this restriction. Since transformers use self-attention methods to capture global context and long-range dependencies efficiently, integrating transformer-based architecture with CNNs is a feasible approach to overcoming these challenges. To address these challenges, we propose the Focal Modulation and Bidirectional Feature Fusion Network for Medical Image Segmentation, referred to as FM-BFF-Net in the remainder of this paper. The network combines convolutional and transformer components, employs a focal modulation attention mechanism to refine context awareness, and introduces a bidirectional feature fusion module that enables efficient interaction between encoder and decoder representations across scales. Through this design, FM-BFF-Net enhances boundary precision and robustness to variations in lesion size, shape, and contrast. Extensive experiments on eight publicly available datasets, including polyp detection, skin lesion segmentation, and ultrasound imaging, show that FM-BFF-Net consistently surpasses recent state-of-the-art methods in Jaccard index and Dice coefficient, confirming its effectiveness and adaptability for diverse medical imaging scenarios.


Towards Explainable Skin Cancer Classification: A Dual-Network Attention Model with Lesion Segmentation and Clinical Metadata Fusion

arXiv.org Artificial Intelligence

Skin cancer is a life-threatening disease where early detection significantly improves patient outcomes. Automated diagnosis from dermoscopic images is challenging due to high intra-class variability and subtle inter-class differences. Many deep learning models operate as "black boxes," limiting clinical trust. In this work, we propose a dual-encoder attention-based framework that leverages both segmented lesions and clinical metadata to enhance skin lesion classification in terms of both accuracy and interpretability. A novel Deep-UNet architecture with Dual Attention Gates (DAG) and Atrous Spatial Pyramid Pooling (ASPP) is first employed to segment lesions. The classification stage uses two DenseNet201 encoders-one on the original image and another on the segmented lesion whose features are fused via multi-head cross-attention. This dual-input design guides the model to focus on salient pathological regions. In addition, a transformer-based module incorporates patient metadata (age, sex, lesion site) into the prediction. We evaluate our approach on the HAM10000 dataset and the ISIC 2018 and 2019 challenges. The proposed method achieves state-of-the-art segmentation performance and significantly improves classification accuracy and average AUC compared to baseline models. To validate our model's reliability, we use Gradient-weighted Class Activation Mapping (Grad-CAM) to generate heatmaps. These visualizations confirm that our model's predictions are based on the lesion area, unlike models that rely on spurious background features. These results demonstrate that integrating precise lesion segmentation and clinical data with attention-based fusion leads to a more accurate and interpretable skin cancer classification model.


What Can We Learn from Inter-Annotator Variability in Skin Lesion Segmentation?

arXiv.org Artificial Intelligence

Medical image segmentation exhibits intra-and inter-annotator variability due to ambiguous object boundaries, annotator preferences, expertise, and tools, among other factors. Lesions with ambiguous boundaries, e.g., spiculated or infiltrative nodules, or irregular borders per the ABCD rule, are particularly prone to disagreement and are often associated with malignancy. In this work, we curate IMA++, the largest multi-annotator skin lesion segmentation dataset, on which we conduct an in-depth study of variability due to annotator, malignancy, tool, and skill factors. We find a statistically significant ( p <0.001) association between inter-annotator agreement (IAA), measured using Dice, and the malignancy of skin lesions. We further show that IAA can be accurately predicted directly from dermoscopic images, achieving a mean absolute error of 0.108. Finally, we leverage this association by utilizing IAA as a "soft" clinical feature within a multi-task learning objective, yielding a 4.2% improvement in balanced accuracy averaged across multiple model architectures and across IMA++ and four public dermoscopic datasets.


Self-Attention Diffusion Models for Zero-Shot Biomedical Image Segmentation: Unlocking New Frontiers in Medical Imaging

arXiv.org Artificial Intelligence

Producing high-quality segmentation masks for medical images is a fundamental challenge in biomedical image analysis. Recent research has explored large-scale supervised training to enable segmentation across various medical imaging modalities and unsupervised training to facilitate segmentation without dense annotations. However, constructing a model capable of segmenting diverse medical images in a zero-shot manner without any annotations remains a significant hurdle. This paper introduces the Attention Diffusion Zero-shot Unsupervised System (ADZUS), a novel approach that leverages self-attention diffusion models for zero-shot biomedical image segmentation. ADZUS harnesses the intrinsic capabilities of pre-trained diffusion models, utilizing their generative and discriminative potentials to segment medical images without requiring annotated training data or prior domain-specific knowledge. The ADZUS architecture is detailed, with its integration of self-attention mechanisms that facilitate context-aware and detail-sensitive segmentations being highlighted. Experimental results across various medical imaging datasets, including skin lesion segmentation, chest X-ray infection segmentation, and white blood cell segmentation, reveal that ADZUS achieves state-of-the-art performance. Notably, ADZUS reached Dice scores ranging from 88.7\% to 92.9\% and IoU scores from 66.3\% to 93.3\% across different segmentation tasks, demonstrating significant improvements in handling novel, unseen medical imagery. It is noteworthy that while ADZUS demonstrates high effectiveness, it demands substantial computational resources and extended processing times. The model's efficacy in zero-shot settings underscores its potential to reduce reliance on costly annotations and seamlessly adapt to new medical imaging tasks, thereby expanding the diagnostic capabilities of AI-driven medical imaging technologies.


Enhancing Skin Disease Diagnosis: Interpretable Visual Concept Discovery with SAM Empowerment

arXiv.org Artificial Intelligence

Current AI-assisted skin image diagnosis has achieved dermatologist-level performance in classifying skin cancer, driven by rapid advancements in deep learning architectures. However, unlike traditional vision tasks, skin images in general present unique challenges due to the limited availability of well-annotated datasets, complex variations in conditions, and the necessity for detailed interpretations to ensure patient safety. Previous segmentation methods have sought to reduce image noise and enhance diagnostic performance, but these techniques require fine-grained, pixel-level ground truth masks for training. In contrast, with the rise of foundation models, the Segment Anything Model (SAM) has been introduced to facilitate promptable segmentation, enabling the automation of the segmentation process with simple yet effective prompts. Efforts applying SAM predominantly focus on dermatoscopy images, which present more easily identifiable lesion boundaries than clinical photos taken with smartphones. This limitation constrains the practicality of these approaches to real-world applications. To overcome the challenges posed by noisy clinical photos acquired via non-standardized protocols and to improve diagnostic accessibility, we propose a novel Cross-Attentive Fusion framework for interpretable skin lesion diagnosis. Our method leverages SAM to generate visual concepts for skin diseases using prompts, integrating local visual concepts with global image features to enhance model performance. Extensive evaluation on two skin disease datasets demonstrates our proposed method's effectiveness on lesion diagnosis and interpretability.


AD-Net: Attention-based dilated convolutional residual network with guided decoder for robust skin lesion segmentation

arXiv.org Artificial Intelligence

In computer-aided diagnosis tools employed for skin cancer treatment and early diagnosis, skin lesion segmentation is important. However, achieving precise segmentation is challenging due to inherent variations in appearance, contrast, texture, and blurry lesion boundaries. This research presents a robust approach utilizing a dilated convolutional residual network, which incorporates an attention-based spatial feature enhancement block (ASFEB) and employs a guided decoder strategy. In each dilated convolutional residual block, dilated convolution is employed to broaden the receptive field with varying dilation rates. To improve the spatial feature information of the encoder, we employed an attention-based spatial feature enhancement block in the skip connections. The ASFEB in our proposed method combines feature maps obtained from average and maximum-pooling operations. These combined features are then weighted using the active outcome of global average pooling and convolution operations. Additionally, we have incorporated a guided decoder strategy, where each decoder block is optimized using an individual loss function to enhance the feature learning process in the proposed AD-Net. The proposed AD-Net presents a significant benefit by necessitating fewer model parameters compared to its peer methods. This reduction in parameters directly impacts the number of labeled data required for training, facilitating faster convergence during the training process. The effectiveness of the proposed AD-Net was evaluated using four public benchmark datasets. We conducted a Wilcoxon signed-rank test to verify the efficiency of the AD-Net. The outcomes suggest that our method surpasses other cutting-edge methods in performance, even without the implementation of data augmentation strategies.


MobileUNETR: A Lightweight End-To-End Hybrid Vision Transformer For Efficient Medical Image Segmentation

arXiv.org Artificial Intelligence

Skin cancer segmentation poses a significant challenge in medical image analysis. Numerous existing solutions, predominantly CNN-based, face issues related to a lack of global contextual understanding. Alternatively, some approaches resort to large-scale Transformer models to bridge the global contextual gaps, but at the expense of model size and computational complexity. Finally many Transformer based approaches rely primarily on CNN based decoders overlooking the benefits of Transformer based decoding models. Recognizing these limitations, we address the need efficient lightweight solutions by introducing MobileUNETR, which aims to overcome the performance constraints associated with both CNNs and Transformers while minimizing model size, presenting a promising stride towards efficient image segmentation. MobileUNETR has 3 main features. 1) MobileUNETR comprises of a lightweight hybrid CNN-Transformer encoder to help balance local and global contextual feature extraction in an efficient manner; 2) A novel hybrid decoder that simultaneously utilizes low-level and global features at different resolutions within the decoding stage for accurate mask generation; 3) surpassing large and complex architectures, MobileUNETR achieves superior performance with 3 million parameters and a computational complexity of 1.3 GFLOP resulting in 10x and 23x reduction in parameters and FLOPS, respectively. Extensive experiments have been conducted to validate the effectiveness of our proposed method on four publicly available skin lesion segmentation datasets, including ISIC 2016, ISIC 2017, ISIC 2018, and PH2 datasets. The code will be publicly available at: https://github.com/OSUPCVLab/MobileUNETR.git


LSSF-Net: Lightweight Segmentation with Self-Awareness, Spatial Attention, and Focal Modulation

arXiv.org Artificial Intelligence

Accurate segmentation of skin lesions within dermoscopic images plays a crucial role in the timely identification of skin cancer for computer-aided diagnosis on mobile platforms. However, varying shapes of the lesions, lack of defined edges, and the presence of obstructions such as hair strands and marker colors make this challenge more complex. \textcolor{red}Additionally, skin lesions often exhibit subtle variations in texture and color that are difficult to differentiate from surrounding healthy skin, necessitating models that can capture both fine-grained details and broader contextual information. Currently, melanoma segmentation models are commonly based on fully connected networks and U-Nets. However, these models often struggle with capturing the complex and varied characteristics of skin lesions, such as the presence of indistinct boundaries and diverse lesion appearances, which can lead to suboptimal segmentation performance.To address these challenges, we propose a novel lightweight network specifically designed for skin lesion segmentation utilizing mobile devices, featuring a minimal number of learnable parameters (only 0.8 million). This network comprises an encoder-decoder architecture that incorporates conformer-based focal modulation attention, self-aware local and global spatial attention, and split channel-shuffle. The efficacy of our model has been evaluated on four well-established benchmark datasets for skin lesion segmentation: ISIC 2016, ISIC 2017, ISIC 2018, and PH2. Empirical findings substantiate its state-of-the-art performance, notably reflected in a high Jaccard index.


S-SYNTH: Knowledge-Based, Synthetic Generation of Skin Images

arXiv.org Artificial Intelligence

Development of artificial intelligence (AI) techniques in medical imaging requires access to large-scale and diverse datasets for training and evaluation. In dermatology, obtaining such datasets remains challenging due to significant variations in patient populations, illumination conditions, and acquisition system characteristics. In this work, we propose S-SYNTH, the first knowledge-based, adaptable open-source skin simulation framework to rapidly generate synthetic skin, 3D models and digitally rendered images, using an anatomically inspired multi-layer, multi-component skin and growing lesion model. The skin model allows for controlled variation in skin appearance, such as skin color, presence of hair, lesion shape, and blood fraction among other parameters. We use this framework to study the effect of possible variations on the development and evaluation of AI models for skin lesion segmentation, and show that results obtained using synthetic data follow similar comparative trends as real dermatologic images, while mitigating biases and limitations from existing datasets including small dataset size, lack of diversity, and underrepresentation.


MUCM-Net: A Mamba Powered UCM-Net for Skin Lesion Segmentation

arXiv.org Artificial Intelligence

Skin lesion segmentation is key for early skin cancer detection. Challenges in automatic segmentation from dermoscopic images include variations in color, texture, and artifacts of indistinct lesion boundaries. Deep learning methods like CNNs and U-Net have shown promise in addressing these issues. To further aid early diagnosis, especially on mobile devices with limited computing power, we present MUCM-Net. This efficient model combines Mamba State-Space Models with our UCM-Net architecture for improved feature learning and segmentation. MUCM-Net's Mamba-UCM Layer is optimized for mobile deployment, offering high accuracy with low computational needs. Tested on ISIC datasets, it outperforms other methods in accuracy and computational efficiency, making it a scalable tool for early detection in settings with limited resources. Our MUCM-Net source code is available for research and collaboration, supporting advances in mobile health diagnostics and the fight against skin cancer. In order to facilitate accessibility and further research in the field, the MUCM-Net source code is https://github.com/chunyuyuan/MUCM-Net